PyPy-STM: first "interesting" release

Armin Rigo — Sat, 05 Jul 2014 09:37:00 GMT

Hi all,

PyPy-STM is now reaching a point where we can say it's good enough to be a GIL-less Python. (We don't guarantee there are no more bugs, so please report them :-) The first official STM release:

pypy-stm-2.3-r2-linux64
(UPDATE: this is release r2, fixing a systematic segfault at start-up on some systems)

This corresponds roughly to PyPy 2.3 (not 2.3.1). It requires 64-bit Linux. More precisely, this release is built for Ubuntu 12.04 to 14.04; you can also rebuild it from source by getting the branch stmgc-c7. You need clang to compile, and you need a patched version of llvm.

This version's performance can reasonably be compared with a regular PyPy, where both include the JIT. Thanks for following the meandering progress of PyPy-STM over the past three years --- we're finally getting somewhere really interesting! We cannot thank enough all contributors to the previous PyPy-STM money pot that made this possible. And, although this blog post is focused on the results from that period of time, I have of course to remind you that we're running a second call for donation for future work, which I will briefly mention again later.

A recap of what we did to get there: around the start of the year we found a new model, a "redo-log"-based STM which uses a couple of hardware tricks to not require chasing pointers, giving it (in this context) exceptionally cheap read barriers. This idea was developed over the following months and (relatively) easily integrated with the JIT compiler. The most recent improvements on the Garbage Collection side are closing the gap with a regular PyPy (there is still a bit more to do there). There is some preliminary user documentation.

Today, the result of this is a PyPy-STM that is capable of running pure Python code on multiple threads in parallel, as we will show in the benchmarks that follow. A quick warning: this is only about pure Python code. We didn't try so far to optimize the case where most of the time is spent in external libraries, or even manipulating "raw" memory like array.array or numpy arrays. To some extent there is no point because the approach of CPython works well for this case, i.e. releasing the GIL around the long-running operations in C. Of course it would be nice if such cases worked as well in PyPy-STM --- which they do to some extent; but checking and optimizing that is future work.

As a starting point for our benchmarks, when running code that only uses one thread, we get a slow-down between 1.2 and 3: at worst, three times as slow; at best only 20% slower than a regular PyPy. This worst case has been brought down --it used to be 10x-- by recent work on "card marking", a useful GC technique that is also present in the regular PyPy (and about which I don't find any blog post; maybe we should write one :-) The main remaining issue is fork(), or any function that creates subprocesses: it works, but is very slow. To remind you of this fact, it prints a line to stderr when used.

Now the real main part: when you run multithreaded code, it scales very nicely with two threads, and less-than-linearly but still not badly with three or four threads. Here is an artificial example:

    total = 0
    lst1 = ["foo"]
    for i in range(100000000):
        lst1.append(i)
        total += lst1.pop()

We run this code N times, once in each of N threads (full benchmark). Run times, best of three:

Number of threads	Regular PyPy (head)	PyPy-STM
N = 1	real 0.92s user+sys 0.92s	real 1.34s user+sys 1.34s
N = 2	real 1.77s user+sys 1.74s	real 1.39s user+sys 2.47s
N = 3	real 2.57s user+sys 2.56s	real 1.58s user+sys 4.106s
N = 4	real 3.38s user+sys 3.38s	real 1.64s user+sys 5.35s

(The "real" time is the wall clock time. The "user+sys" time is the recorded CPU time, which can be larger than the wall clock time if multiple CPUs run in parallel. This was run on a 4x2 cores machine. For direct comparison, avoid loops that are so trivial that the JIT can remove all allocations from them: right now PyPy-STM does not handle this case well. It has to force a dummy allocation in such loops, which makes minor collections occur much more frequently.)

Four threads is the limit so far: only four threads can be executed in parallel. Similarly, the memory usage is limited to 2.5 GB of GC objects. These two limitations are not hard to increase, but at least increasing the memory limit requires fighting against more LLVM bugs. (Include here snark remarks about LLVM.)

Here are some measurements from more real-world benchmarks. This time, the amount of work is fixed and we parallelize it on T threads. The first benchmark is just running translate.py on a trunk PyPy. The last three benchmarks are here.

Benchmark	PyPy 2.3	(PyPy head)	PyPy-STM, T=1	T=2	T=3	T=4
`translate.py --no-allworkingmodules` (annotation step)	184s	(170s)	386s (2.10x)	n/a
multithread-richards 5000 iterations	24.2s	(16.8s)	52.5s (2.17x)	37.4s (1.55x)	25.9s (1.07x)	32.7s (1.35x)
mandelbrot divided in 16-18 bands	22.9s	(18.2s)	27.5s (1.20x)	14.4s (0.63x)	10.3s (0.45x)	8.71s (0.38x)
btree	2.26s	(2.00s)	2.01s (0.89x)	2.22s (0.98x)	2.14s (0.95x)	2.42s (1.07x)

This shows various cases that can occur:

The mandelbrot example runs with minimal overhead and very good parallelization. It's dividing the plane to compute in bands, and each of the T threads receives the same number of bands.
Richards, a classical benchmark for PyPy (tweaked to run the iterations in multiple threads), is hard to beat on regular PyPy: we suspect that the difference is due to the fact that a lot of paths through the loops don't allocate, triggering the issue already explained above. Moreover, the speed of Richards was again improved dramatically recently, in trunk.
The translation benchmark measures the time translate.py takes to run the first phase only, "annotation" (for now it consumes too much memory to run translate.py to the end). Moreover the timing starts only after the large number of subprocesses spawned at the beginning (mostly gcc). This benchmark is not parallel, but we include it for reference here. The slow-down factor of 2.1x is still too much, but we have some idea about the reasons: most likely, again the Garbage Collector, missing the regular PyPy's very fast small-object allocator for old objects. Also, translate.py is an example of application that could, with reasonable efforts, be made largely parallel in the future using atomic blocks.
Atomic blocks are also present in the btree benchmark. I'm not completely sure but it seems that, in this case, the atomic blocks create too many conflicts between the threads for actual parallization: the base time is very good, but running more threads does not help at all.

As a summary, PyPy-STM looks already useful to run CPU-bound multithreaded applications. We are certainly still going to fight slow-downs, but it seems that there are cases where 2 threads are enough to outperform a regular PyPy, by a large margin. Please try it out on your own small examples!

And, at the same time, please don't attempt to retrofit threads inside an existing large program just to benefit from PyPy-STM! Our goal is not to send everyone down the obscure route of multithreaded programming and its dark traps. We are going finally to shift our main focus on the phase 2 of our research (donations welcome): how to enable a better way of writing multi-core programs. The starting point is to fix and test atomic blocks. Then we will have to debug common causes of conflicts and fix them or work around them; and try to see how common frameworks like Twisted can be adapted.

Lots of work ahead, but lots of work behind too :-)

Armin (thanks Remi as well for the work).

PyPy (Posts about releasestm)

PyPy-STM: first "interesting" release